Report for Sequence Feature Glyma04g18960
Feature Type: gene_model
Chromosome: Gm04
Start: 20772779
stop: 20781919
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma04g18960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G15050 AT
Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434
SoyBase E_val: 0 ISS
GO:0007020 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule nucleation
SoyBase N/A ISS
GO:0016051 GO-bp
Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0008375 GO-mf
Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity
SoyBase N/A ISS
GO:0016757 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups
SoyBase N/A ISS
KOG0799
KOG
Branching enzyme
JGI ISS
PTHR19297 Panther
GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
JGI ISS
PTHR19297:SF2 Panther
GALACTOSYLTRANSFERASE-RELATED
JGI ISS
PF02485 PFAM
Core-2/I-Branching enzyme
JGI ISS
UniRef100_G7JCW1 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7JCW1_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1JW61 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1JW61_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma04g18960
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma04g18960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.04g148100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma04g18960
Coding sequences of Glyma04g18960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma04g18960.1 sequence type=CDS gene model=Glyma04g18960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAACCCAACAAGCACCACCAACAACACCAGAACAAGACCAAGAAAAAATGGTTCCTCCCACTCATCCTCTCTCTCCTCATCTCCACCTTCCTCATCCTCCTCTCCGTCTTCGTTTCCTCTAACTCACCCTCCCAGCGGCACCGCCGCGCCCCAGTTCCAAAAGAAGTGCCACATTTCGTTGAGTCCAAGCTGAAGGTAAGTCCCACATCGGCCAACCTGGTTCCGAGAATCGCGTATTTAATCTCTGGCTCAATGGGAGACGGTGAAAGCCTGAAAAGGACGCTGAAGGCTCTGTACCATCCGTGGAACCACTACGCGGTGCACTTGGACCTCGAGGCCTCTTCCAAGGAGAGGTTGGACCTCGCCGATTTCGTGAAGAACGAGCCTCTGTTTGAGAAATTCGGGAACGTTAGAACGGTGGTTAAGGCCAACTTGGTTACTTACAGAGGACCCACTATGGTCACTAATACCCTTCACGCCGCTGCTATTTTGTTGAACCAAGCTGGGGACTGGGATTGGTTCATTAATTTGAGTGCTTCTGATTATCCTTTGGTAACCCAAGATGATCTGCTGCATACGCTTTCGTCTATTCCCAGACACCTGAACTTCATTGAACACACCAGTGATATTGGTTGGAAGGTGTATCATAGAGCCAAGCCAGTTATAATTGATCCTGGCCTATATAGCGTGAATAAATCTGATGTATTTTGGGTATCACAGAAAAGAAATGTACCCACTGCTTATAAACTTTTTACAGGTTCTGCCTGGATGATGCTCTCTCGCCCATTTATTGAATACTGTATATGGGGTTGGGACAACTTACCCAGAATAGTCTTGATGTATTACGCCAACTTTCTGTCTTCCCCCGAAGGGTATTTTCACACAGTCATCTGCAATGCCGAGGAGTTTCGTAACACTACCGTTAATCATGACCTCCACTTCATATCATGGGACAACCCTCCTAAACAACACCCACATTTTCTTACAGTTAATGACTACCAGAGAATGGTGGACAGCAATGCTCCATTTGCTAGGAAATTTGGCAGGAATGAACCAGTCTTGGACAAGATTGATACTGAACTCTTGGGACAAAATGCAGATGGTTATGTTCCTGGCAGGTGGTTCAGTCAGGCAAATTCAAGCATCACTAAACAGTACTCCGGCATAAGAAATATCACTGACCTAAGGCCTGGCCCAGGAGCTGAAAGGCTTGGACACCTTATAAATGGTTTATTATCAGCAGAAAATTTTCAGGCAAATCGGTGTTTTTGA
Predicted protein sequences of Glyma04g18960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma04g18960.1 sequence type=predicted peptide gene model=Glyma04g18960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEPNKHHQQHQNKTKKKWFLPLILSLLISTFLILLSVFVSSNSPSQRHRRAPVPKEVPHFVESKLKVSPTSANLVPRIAYLISGSMGDGESLKRTLKALYHPWNHYAVHLDLEASSKERLDLADFVKNEPLFEKFGNVRTVVKANLVTYRGPTMVTNTLHAAAILLNQAGDWDWFINLSASDYPLVTQDDLLHTLSSIPRHLNFIEHTSDIGWKVYHRAKPVIIDPGLYSVNKSDVFWVSQKRNVPTAYKLFTGSAWMMLSRPFIEYCIWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLTVNDYQRMVDSNAPFARKFGRNEPVLDKIDTELLGQNADGYVPGRWFSQANSSITKQYSGIRNITDLRPGPGAERLGHLINGLLSAENFQANRCF*